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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35088343_35115797_R

Intron Information:

Intron Rank:
63
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35088343 - 35115797
Intron Length:
27455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACATGC
5'SS Class:
major
3'SS Sequence:
TTTTTTCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
ATTTTAGTAATT
Flanking Amino Acid:
AMSSYLRNDSVLDMARHVPL
Intron Amino Acid Position:
4132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1.2
66.9
40
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
93.1
0.97
0.5
93.2
15.7
Minor 5ss
43.8
-0.7
2.9
60
44.6
Minor BPS
52.6
0.16
2.2
78.9
37.5

Associated Gene:

Gene:
BIRC6
Ensembl Gene ID:
ENSAPLG00000014195
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014881
35067055 - 35226910
159856