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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35115967_35117954_R

Intron Information:

Intron Rank:
62
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35115967 - 35117954
Intron Length:
1988

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TTATGATTAAAT
Flanking Amino Acid:
EEEHVTCLLQVLASYINPAG
Intron Amino Acid Position:
4076

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.5
1.05
0.7
92.2
16.5
Major BPS
84.6
0.86
1
74
41.2
Major PPT
83.8
0.76
0.8
81.4
35
Minor 5ss
32
-2.1
2.8
41.5
45.1
Minor BPS
55.7
0.26
2.1
79.73
41.5

Associated Gene:

Gene:
BIRC6
Ensembl Gene ID:
ENSAPLG00000014195
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014881
35067055 - 35226910
159856