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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35120564_35126674_R

Intron Information:

Intron Rank:
60
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
35120564 - 35126674
Intron Length:
6111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTCATTAGA
5'SS Class:
major
3'SS Sequence:
CATAGATTAAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TGTTCCATAAAC
Flanking Amino Acid:
SKNGHFQWLVDYIELLKENV
Intron Amino Acid Position:
3929

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.3
70.8
41.1
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
50.7
0.02
1.2
49.5
41.8
Minor 5ss
30.6
-2.2
2.5
35.2
40.4
Minor BPS
66.8
0.51
1.7
78.1
36.6

Associated Gene:

Gene:
BIRC6
Ensembl Gene ID:
ENSAPLG00000014195
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014881
35067055 - 35226910
159856