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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35129384_35132012_R

Intron Information:

Intron Rank:
58
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35129384 - 35132012
Intron Length:
2629

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCATGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
TTTTTCCCATGT
Flanking Amino Acid:
TLAEVLDHVSDTPSITAKLI
Intron Amino Acid Position:
3810

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.8
1.13
0.8
81.8
38.5
Major BPS
71.6
0.54
1
72
33.1
Major PPT
79
0.65
0.8
75
29.1
Minor 5ss
33.5
-1.9
4
48.7
47.5
Minor BPS
44.8
-0.3
2.3
72.42
44.5

Associated Gene:

Gene:
BIRC6
Ensembl Gene ID:
ENSAPLG00000014195
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014881
35067055 - 35226910
159856