About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35132143_35133904_R


Intron Information:

Intron Rank:
57

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
35132143 - 35133904

Intron Length:
1762

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CCA|GTAAGAGCT

5'SS Class:
major

3'SS Sequence:
TTTTTTATTTCAG|C

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TTTTTAT

U12 Branch Point Sequence:
TTTTTTTTATTT

Flanking Amino Acid:
VTLFLQSPCPLYKGRINATS

Intron Amino Acid Position:
3767

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
72.1
0.52
1
66.6
37.3

Major BPS
96.5
1.15
0.6
86
34.2

Major PPT
94.3
1
0.6
93.4
22.5

Minor 5ss
35.3
-1.7
3.5
54.4
43.3

Minor BPS
70.5
0.72
1.5
86.8
33.5

Associated Gene:

Gene:
BIRC6

Ensembl Gene ID:

Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

35067055 - 35226910
159856