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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35134049_35135035_R

Intron Information:

Intron Rank:
56
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35134049 - 35135035
Intron Length:
987

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGCGTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AATATTTTAAAT
Flanking Amino Acid:
HPNNQRLMAQVLCELFQSSP
Intron Amino Acid Position:
3719

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.8
76.5
26.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
77.6
0.62
0.9
69
41.8
Minor 5ss
24.3
-3
3.1
28.7
43.6
Minor BPS
61.3
0.43
1.4
73.38
36.9

Associated Gene:

Gene:
BIRC6
Ensembl Gene ID:
ENSAPLG00000014195
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014881
35067055 - 35226910
159856