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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35135817_35138782_R

Intron Information:

Intron Rank:
55
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35135817 - 35138782
Intron Length:
2966

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
CTGTCTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TATGTCTTGATG
Flanking Amino Acid:
LPALLDRELFESLFNWSMSL
Intron Amino Acid Position:
3458

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
77
33.6
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
81.9
0.72
0.8
76.1
32.5
Minor 5ss
36.3
-1.6
2.7
38.8
40.3
Minor BPS
59.8
0.16
1.5
62.31
40.3

Associated Gene:

Gene:
BIRC6
Ensembl Gene ID:
ENSAPLG00000014195
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014881
35067055 - 35226910
159856