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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35141053_35143235_R

Intron Information:

Intron Rank:
52
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35141053 - 35143235
Intron Length:
2183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
GATACATTAGCT
Flanking Amino Acid:
LPSEDQVSKTSIGWLRLLHH
Intron Amino Acid Position:
3262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
72.2
39.5
Major BPS
68
0.45
1
57.8
39
Major PPT
94
0.99
0.5
92.6
17.2
Minor 5ss
37
-1.5
3.2
50.1
46.5
Minor BPS
53
0.17
1.9
72.82
43

Associated Gene:

Gene:
BIRC6
Ensembl Gene ID:
ENSAPLG00000014195
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014881
35067055 - 35226910
159856