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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35144358_35145433_R

Intron Information:

Intron Rank:
50
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35144358 - 35145433
Intron Length:
1076

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTTGAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TAAATATTAATA
Flanking Amino Acid:
AEGIHNFAPLGSITSSSPTA
Intron Amino Acid Position:
3102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.4
32.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
80.9
0.69
1
82.9
32.5
Minor 5ss
33.9
-1.8
3.3
40.8
45.4
Minor BPS
54.7
0.14
1.6
63.35
36.3

Associated Gene:

Gene:
BIRC6
Ensembl Gene ID:
ENSAPLG00000014195
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014881
35067055 - 35226910
159856