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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35145629_35145808_R

Intron Information:

Intron Rank:
49
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35145629 - 35145808
Intron Length:
180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
GTGTTATACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTTTCCCCCACC
Flanking Amino Acid:
SEALKAFHDMGGVQLICNNM
Intron Amino Acid Position:
3037

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
75.5
40.6
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
68.1
0.41
1
62
42.8
Minor 5ss
36.6
-1.5
3
41.4
44.7
Minor BPS
51.5
0.03
2.3
75.8
40.5

Associated Gene:

Gene:
BIRC6
Ensembl Gene ID:
ENSAPLG00000014195
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014881
35067055 - 35226910
159856