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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35145906_35146431_R

Intron Information:

Intron Rank:
48
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35145906 - 35146431
Intron Length:
526

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TATTTCTTAACT
Flanking Amino Acid:
YMACGYMGRQGSLATCQLSE
Intron Amino Acid Position:
3005

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
82.3
32.2
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
94
0.99
0.5
88.9
28.2
Minor 5ss
43.4
-0.7
3.1
60.6
44.5
Minor BPS
89.1
1.31
0.8
97.02
27

Associated Gene:

Gene:
BIRC6
Ensembl Gene ID:
ENSAPLG00000014195
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014881
35067055 - 35226910
159856