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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35151329_35152348_R

Intron Information:

Intron Rank:
45
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35151329 - 35152348
Intron Length:
1020

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCACC
5'SS Class:
major
3'SS Sequence:
CTTTTTCCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TACTTATTAAAA
Flanking Amino Acid:
PHGTNQHSPQVGPTATQAMQ
Intron Amino Acid Position:
2716

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
71.7
38.4
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
84.7
0.78
0.7
78
30.9
Minor 5ss
40.7
-1
2.8
53.4
43.4
Minor BPS
57
0.22
1.7
66.77
39.1

Associated Gene:

Gene:
BIRC6
Ensembl Gene ID:
ENSAPLG00000014195
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014881
35067055 - 35226910
159856