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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35152483_35156343_R

Intron Information:

Intron Rank:
44
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35152483 - 35156343
Intron Length:
3861

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTTAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AGAGATTTAATT
Flanking Amino Acid:
LTLMTNMQLNAGPSSAIGAQ
Intron Amino Acid Position:
2671

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
80.5
34.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
82.3
0.73
1
87.2
30.4
Minor 5ss
42.1
-0.9
2.9
55.5
43.9
Minor BPS
52
0.14
1.6
64.82
39.8

Associated Gene:

Gene:
BIRC6
Ensembl Gene ID:
ENSAPLG00000014195
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014881
35067055 - 35226910
159856