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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35157385_35158571_R

Intron Information:

Intron Rank:
42
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35157385 - 35158571
Intron Length:
1187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGAAG
5'SS Class:
major
3'SS Sequence:
TTCCTTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TTTTCTTTTTTT
Flanking Amino Acid:
FSMLQVHHVQLESLLQLWLT
Intron Amino Acid Position:
2592

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1
64.6
40.9
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
91.4
0.93
0.6
87.5
22.7
Minor 5ss
37.1
-1.5
3.2
47.3
48.3
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
BIRC6
Ensembl Gene ID:
ENSAPLG00000014195
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014881
35067055 - 35226910
159856