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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35160448_35161692_R

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35160448 - 35161692
Intron Length:
1245

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGATGC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTTAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTAAAT
U12 Branch Point Sequence:
TTGTTTTTTAAG
Flanking Amino Acid:
KDPLAAKVFKPISSTWYDYW
Intron Amino Acid Position:
2450

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
68.6
37.4
Major BPS
69.8
0.49
1.1
75.5
35.2
Major PPT
81.9
0.72
1
86.9
31.1
Minor 5ss
44.4
-0.6
2.8
59.5
45.2
Minor BPS
49.7
-0.1
1.8
59.4
43

Associated Gene:

Gene:
BIRC6
Ensembl Gene ID:
ENSAPLG00000014195
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014881
35067055 - 35226910
159856