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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35162343_35162796_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35162343 - 35162796
Intron Length:
454

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTTTT
5'SS Class:
major
3'SS Sequence:
ATGTCATGCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTCAT
U12 Branch Point Sequence:
GTCTGCTTAATG
Flanking Amino Acid:
LTCMLQDILAGELLAPIAAE
Intron Amino Acid Position:
2353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
81.7
32.3
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
60.2
0.23
1
54.6
39.9
Minor 5ss
48.6
-0.1
2.4
67.6
43.4
Minor BPS
60.5
0.19
1.9
63.65
44.7

Associated Gene:

Gene:
BIRC6
Ensembl Gene ID:
ENSAPLG00000014195
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014881
35067055 - 35226910
159856