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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35166275_35168119_R

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35166275 - 35168119
Intron Length:
1845

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGATGC
5'SS Class:
strong_major
3'SS Sequence:
TTAATTTCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TCAAATTTAATT
Flanking Amino Acid:
QAKLKQATSKHFKDLIRLRR
Intron Amino Acid Position:
2220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
68.6
37.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
82.5
0.73
0.9
76.9
37.1
Minor 5ss
44.4
-0.6
2.8
59.5
45.2
Minor BPS
57.9
0.33
1.5
70.31
40.9

Associated Gene:

Gene:
BIRC6
Ensembl Gene ID:
ENSAPLG00000014195
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014881
35067055 - 35226910
159856