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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35168252_35168846_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35168252 - 35168846
Intron Length:
595

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACTTCT
5'SS Class:
major
3'SS Sequence:
CATTTTCTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCCTATTAACA
Flanking Amino Acid:
IRKQLVHHKQQLNLLKAKQK
Intron Amino Acid Position:
2176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1.1
77.5
33.5
Major BPS
100
1.24
0.5
100
0
Major PPT
83.1
0.74
0.7
81.5
30.1
Minor 5ss
42.9
-0.8
2.8
59.5
45
Minor BPS
63.9
0.43
1.6
73.68
37.8

Associated Gene:

Gene:
BIRC6
Ensembl Gene ID:
ENSAPLG00000014195
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014881
35067055 - 35226910
159856