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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35179715_35182605_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35179715 - 35182605
Intron Length:
2891

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGAAGG
5'SS Class:
strong_major
3'SS Sequence:
ATTCTGTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TATTCTTTAAAT
Flanking Amino Acid:
LTPMEALLQTRYGLYSSPFD
Intron Amino Acid Position:
1432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
66.6
44.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
83
0.74
0.9
77
36.5
Minor 5ss
31.8
-2.1
3.1
40.5
45.3
Minor BPS
80.2
1.03
1.2
90.66
32.3

Associated Gene:

Gene:
BIRC6
Ensembl Gene ID:
ENSAPLG00000014195
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014881
35067055 - 35226910
159856