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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35184705_35186166_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35184705 - 35186166
Intron Length:
1462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
ATCCCTCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTGTTTTTATCC
Flanking Amino Acid:
RFKKTSISKERVQRCAMLQF
Intron Amino Acid Position:
1252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1.1
73.9
42.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
72
0.5
0.8
65.8
29.4
Minor 5ss
31.5
-2.1
2.4
34.7
41
Minor BPS
64.6
0.44
1.6
73.19
38.5

Associated Gene:

Gene:
BIRC6
Ensembl Gene ID:
ENSAPLG00000014195
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014881
35067055 - 35226910
159856