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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35188550_35191310_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35188550 - 35191310
Intron Length:
2761

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
CCTTTATCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
TTTCCTTTATCT
Flanking Amino Acid:
NKAPGLGKVNAHNIETERNG
Intron Amino Acid Position:
1075

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
73.4
37.3
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
82
0.72
0.8
73.5
36
Minor 5ss
33
-1.9
2.9
37.5
41.1
Minor BPS
72.7
0.79
1.5
89.39
35

Associated Gene:

Gene:
BIRC6
Ensembl Gene ID:
ENSAPLG00000014195
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014881
35067055 - 35226910
159856