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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35191472_35195805_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35191472 - 35195805
Intron Length:
4334

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATAGG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCCGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAA
U12 Branch Point Sequence:
TGTTTCCCGACA
Flanking Amino Acid:
HTRTWKLQTDSNSWDEHVFE
Intron Amino Acid Position:
1021

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
75.1
41.1
Major BPS
73.4
0.58
0.9
63.7
35.1
Major PPT
74
0.54
1
69.7
36.8
Minor 5ss
34.5
-1.8
2.8
42.5
44.3
Minor BPS
49.7
-0
1.9
68.13
37.8

Associated Gene:

Gene:
BIRC6
Ensembl Gene ID:
ENSAPLG00000014195
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014881
35067055 - 35226910
159856