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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35196032_35200478_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35196032 - 35200478
Intron Length:
4447

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTAATTATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TGTTCTTTAATT
Flanking Amino Acid:
LSNPSSPGITGVDLLVDQPF
Intron Amino Acid Position:
946

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
81.2
33.8
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
76
0.59
0.9
74.6
39.9
Minor 5ss
41.3
-1
3
58.7
45.8
Minor BPS
84.7
1.17
0.9
92.55
29.6

Associated Gene:

Gene:
BIRC6
Ensembl Gene ID:
ENSAPLG00000014195
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014881
35067055 - 35226910
159856