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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35200629_35209582_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35200629 - 35209582
Intron Length:
8954

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACTC
5'SS Class:
strong_major
3'SS Sequence:
CTGATGATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
GCTTCTTTCATT
Flanking Amino Acid:
GTDRLCACTKGGELHFLQIG
Intron Amino Acid Position:
896

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
79
35.3
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
66.6
0.37
1
62.8
42.9
Minor 5ss
36.5
-1.5
3.2
50.8
45.8
Minor BPS
61.9
0.46
1.7
75.88
41.7

Associated Gene:

Gene:
BIRC6
Ensembl Gene ID:
ENSAPLG00000014195
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014881
35067055 - 35226910
159856