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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35212362_35214430_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35212362 - 35214430
Intron Length:
2069

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCCAC
5'SS Class:
major
3'SS Sequence:
AATTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
TCATTCATAAAT
Flanking Amino Acid:
CSDIPKLEGDSDDLLEDSDS
Intron Amino Acid Position:
410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
65
41.2
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
87.6
0.84
0.8
85.4
34.2
Minor 5ss
44.3
-0.6
2.8
58.6
46.2
Minor BPS
58
0.33
1.7
74.83
41.5

Associated Gene:

Gene:
BIRC6
Ensembl Gene ID:
ENSAPLG00000014195
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014881
35067055 - 35226910
159856