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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35214592_35214687_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35214592 - 35214687
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATACAAT
5'SS Class:
major
3'SS Sequence:
TGTTGTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTCAA
U12 Branch Point Sequence:
ATGTCAAAGATC
Flanking Amino Acid:
CIWDVSKLMKVHLKFEINAY
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
73
37.8
Major BPS
66.8
0.42
1.1
69.4
37.7
Major PPT
82.6
0.73
0.8
80.5
37
Minor 5ss
46.5
-0.4
2.8
65.5
45.8
Minor BPS
41.9
-0.6
2
53.71
38.3

Associated Gene:

Gene:
BIRC6
Ensembl Gene ID:
ENSAPLG00000014195
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014881
35067055 - 35226910
159856