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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35214911_35216057_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
35214911 - 35216057
Intron Length:
1147

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTAATATGAAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTGTTTTTAATA
Flanking Amino Acid:
LVCWEPTDEPWSEHERHSPN
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
79.4
29.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
52.1
0.05
1.2
53.7
44
Minor 5ss
40.6
-1
2.7
47.5
42.3
Minor BPS
75.5
0.8
1.1
78.11
33

Associated Gene:

Gene:
BIRC6
Ensembl Gene ID:
ENSAPLG00000014195
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014881
35067055 - 35226910
159856