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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35220170_35222945_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35220170 - 35222945
Intron Length:
2776

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATAC
5'SS Class:
strong_major
3'SS Sequence:
ATCTGCATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TACTCTTGCACA
Flanking Amino Acid:
VVQLELPVTEAQQLLSACIE
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
81.2
26.3
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
70.9
0.47
0.9
67.3
38.5
Minor 5ss
38.2
-1.3
3.1
49.9
46.6
Minor BPS
50.7
0.01
1.9
65.04
41.5

Associated Gene:

Gene:
BIRC6
Ensembl Gene ID:
ENSAPLG00000014195
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014881
35067055 - 35226910
159856