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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35309527_35320414_R

Intron Information:

Intron Rank:
138603
Intron Class:
major
Intron Phase:
Intron Coordinates:
35309527 - 35320414
Intron Length:
10888

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGAGCT
5'SS Class:
major
3'SS Sequence:
ATTTTATATGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTCCCAGCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
0.9
70.4
33.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80.2
0.68
0.9
75
38.5
Minor 5ss
27.8
-2.6
3.3
36.6
41.5
Minor BPS
45.7
-0.2
2.1
70.1
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022058
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033445
35299461 - 35320609
21149