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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35313466_35314850_R

Intron Information:

Intron Rank:
138607
Intron Class:
major
Intron Phase:
Intron Coordinates:
35313466 - 35314850
Intron Length:
1385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
ATATGCTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CTTCTCATAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
69.4
0.44
0.9
62
39.2
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
58.2
0.26
1.6
69.2
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022058
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045724
35313378 - 35320620
7243