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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35314940_35320414_R

Intron Information:

Intron Rank:
138608
Intron Class:
major
Intron Phase:
Intron Coordinates:
35314940 - 35320414
Intron Length:
5475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGAGCT
5'SS Class:
major
3'SS Sequence:
TGTTTGTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAGGAA
U12 Branch Point Sequence:
CGCAGCTGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
0.9
70.4
33.4
Major BPS
50.5
0.01
1.4
51.7
43.9
Major PPT
82.5
0.73
0.9
80.5
37
Minor 5ss
27.8
-2.6
3.3
36.6
41.5
Minor BPS
45.8
-0.2
1.9
57.96
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022058
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045724
35313378 - 35320620
7243