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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35381009_35385786_R

Intron Information:

Intron Rank:
151317
Intron Class:
major
Intron Phase:
Intron Coordinates:
35381009 - 35385786
Intron Length:
4778

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAATT
5'SS Class:
strong_major
3'SS Sequence:
TTTATCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATATTTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
87
27.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
90.7
0.92
0.7
88.8
28
Minor 5ss
38.8
-1.3
3.2
57.6
46.6
Minor BPS
60.7
0.42
1.6
77.3
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028945
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047795
35378397 - 35391468
13072
ENSAPLT00000024913
35378397 - 35386704
8308