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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35384491_35385786_R

Intron Information:

Intron Rank:
151320
Intron Class:
major
Intron Phase:
Intron Coordinates:
35384491 - 35385786
Intron Length:
1296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAATT
5'SS Class:
strong_major
3'SS Sequence:
CTCTATTGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AATTAATTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
87
27.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
72.3
0.5
0.9
67.4
37.6
Minor 5ss
38.8
-1.3
3.2
57.6
46.6
Minor BPS
55.9
0.26
1.9
76.02
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028945
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046937
35384402 - 35391468
7067