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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35385917_35390538_R

Intron Information:

Intron Rank:
151321
Intron Class:
major
Intron Phase:
Intron Coordinates:
35385917 - 35390538
Intron Length:
4622

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCATG
5'SS Class:
strong_major
3'SS Sequence:
ACTTATGTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTGGTTTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
81.8
38.5
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
72.7
0.51
1
69.2
40.9
Minor 5ss
43
-0.8
2.9
56.9
47.4
Minor BPS
71.6
0.75
1.3
82.67
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028945
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047795
35378397 - 35391468
13072
ENSAPLT00000046937
35384402 - 35391468
7067