About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35394431_35396083_F

Intron Information:

Intron Rank:
143943
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
35394431 - 35396083
Intron Length:
1653

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTGAACGAGACAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TACTCATCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.2
30.8
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
52.6
0.06
1.2
46.7
44.8
Minor 5ss
34.6
-1.8
2.7
34
41.5
Minor BPS
58.7
0.27
1.8
70.47
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027584
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036269
35391857 - 35396406
4550