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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35411875_35413950_R

Intron Information:

Intron Rank:
147293
Intron Class:
major
Intron Phase:
Intron Coordinates:
35411875 - 35413950
Intron Length:
2076

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTTGC
5'SS Class:
major
3'SS Sequence:
CTCACCCATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCACTCACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
62.6
38.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
69.9
0.45
0.9
66.1
34.7
Minor 5ss
38
-1.4
3
53.5
43.7
Minor BPS
49.6
-0
2
69.54
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026576
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027706
35411594 - 35414283
2690