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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35414175_35426718_R

Intron Information:

Intron Rank:
147294
Intron Class:
major
Intron Phase:
Intron Coordinates:
35414175 - 35426718
Intron Length:
12544

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGTCTC
5'SS Class:
major
3'SS Sequence:
TCTCTCATTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTTTCTCTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.3
68.8
42.3
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
82.3
0.73
0.8
73.8
35.4
Minor 5ss
40.3
-1.1
2.8
53.3
43.8
Minor BPS
58.1
0.34
2
84.17
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026576
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042524
35412815 - 35426794
13980