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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35433620_35434579_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35433620 - 35434579
Intron Length:
960

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTCGA
5'SS Class:
major
3'SS Sequence:
TCTTTTCTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAA
U12 Branch Point Sequence:
CTTTTCTTTAAG
Flanking Amino Acid:
TSSEEAESEGGRL*
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
65
42.7
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
82
0.72
0.9
86.9
24.3
Minor 5ss
27.7
-2.6
2.7
23.9
36.9
Minor BPS
55.4
0.02
1.9
63.92
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015804
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016482
35432135 - 35434589
2455