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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35433620_35435100_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35433620 - 35435100
Intron Length:
1481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTCGA
5'SS Class:
major
3'SS Sequence:
CTTGTCTGTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
TGTCTGAGAACT
Flanking Amino Acid:
TSSEEAESEGGFFSVMKKLM
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
65
42.7
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
78.8
0.65
0.9
76.7
37.4
Minor 5ss
27.7
-2.6
2.7
23.9
36.9
Minor BPS
43.8
-0.3
2.3
68.08
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015804
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042220
35432135 - 35435134
3000