About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35499386_35499862_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35499386 - 35499862
Intron Length:
477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TCCCTCTGACCT
Flanking Amino Acid:
MEAACNSMALERLGEA
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1.3
75.3
40.8
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
86
0.81
0.7
80.5
24.8
Minor 5ss
32.3
-2
2.8
43.1
43.7
Minor BPS
48.7
-0
1.8
65.4
45.2

Associated Gene:

Gene:
CYP1B1
Ensembl Gene ID:
ENSAPLG00000001407
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001397
35497020 - 35499882
2863