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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35573083_35574171_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35573083 - 35574171
Intron Length:
1089

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTAAGCTTAAGT
Flanking Amino Acid:
KKTWEMIEQQQNSHSNMQAP
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88.4
18.8
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
88.4
0.86
0.7
83.2
32
Minor 5ss
29.6
-2.3
2.6
32.7
42.2
Minor BPS
56.3
0.28
2.1
77.57
44.5

Associated Gene:

Gene:
EIF2AK2
Ensembl Gene ID:
ENSAPLG00000030443
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029871
35571378 - 35600653
29276