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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35576926_35577942_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35576926 - 35577942
Intron Length:
1017

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGTAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCATGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GGTATCTTAGCT
Flanking Amino Acid:
LPSEKASPLQRNGQNSAMKS
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
72.1
35.8
Major BPS
100
1.24
0.5
100
0
Major PPT
81.3
0.7
0.8
78
29.6
Minor 5ss
35
-1.7
3.4
46.3
49
Minor BPS
59.7
0.38
1.6
74.36
41.9

Associated Gene:

Gene:
EIF2AK2
Ensembl Gene ID:
ENSAPLG00000030443
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029871
35571378 - 35600653
29276