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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35578261_35592894_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35578261 - 35592894
Intron Length:
14634

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
TATATATTACTT
Flanking Amino Acid:
SEENEYTADERFLKDYKNIE
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
75.5
40.6
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
89.3
0.88
0.6
88.7
20.6
Minor 5ss
32.9
-2
2.9
40.4
45.3
Minor BPS
49.3
0.03
1.9
70.65
40.3

Associated Gene:

Gene:
EIF2AK2
Ensembl Gene ID:
ENSAPLG00000030443
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029871
35571378 - 35600653
29276