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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35593015_35593963_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35593015 - 35593963
Intron Length:
949

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
CTTCTCCAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGAGAT
U12 Branch Point Sequence:
TCTTCTCCAAAC
Flanking Amino Acid:
IYAIKRVELKEKVKREVQGL
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.6
37.3
Major BPS
64
0.35
1.3
60.7
45.9
Major PPT
70.8
0.47
0.9
66.6
33.3
Minor 5ss
38.3
-1.3
2.7
43.9
37
Minor BPS
48.6
-0.1
2
64.59
40.8

Associated Gene:

Gene:
EIF2AK2
Ensembl Gene ID:
ENSAPLG00000030443
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029871
35571378 - 35600653
29276