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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35594072_35595957_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35594072 - 35595957
Intron Length:
1886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTGCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TAGTGTATAACT
Flanking Amino Acid:
GLDYMTYTRSRQKSETKIPC
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1.1
75
35.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
92.1
0.95
0.6
87.8
22.1
Minor 5ss
38.5
-1.3
3.1
50.7
45.7
Minor BPS
52.3
0.15
2
73.81
43.1

Associated Gene:

Gene:
EIF2AK2
Ensembl Gene ID:
ENSAPLG00000030443
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029871
35571378 - 35600653
29276