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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35600456_35600539_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35600456 - 35600539
Intron Length:
84

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAATAT
5'SS Class:
major
3'SS Sequence:
ATTCTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AACTCCTCAATT
Flanking Amino Acid:
EGFTKQFKTQASIIRRMLSK
Intron Amino Acid Position:
447

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
72.8
32.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
89.4
0.89
0.7
84.7
29.3
Minor 5ss
45
-0.5
3
64.3
47.2
Minor BPS
66.1
0.58
1.5
76.03
40.7

Associated Gene:

Gene:
EIF2AK2
Ensembl Gene ID:
ENSAPLG00000030443
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029871
35571378 - 35600653
29276