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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35605353_35606146_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35605353 - 35606146
Intron Length:
794

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TTTTTCTTAACA
Flanking Amino Acid:
QANEQAADQFRVRFKNKQEE
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
80.2
28.1
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
87.9
0.85
0.8
85.2
28
Minor 5ss
40.9
-1
3.2
56
48.2
Minor BPS
91.6
1.3
0.7
95.02
20.5

Associated Gene:

Gene:
GPATCH11
Ensembl Gene ID:
ENSAPLG00000009863
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018504
35603395 - 35610285
6891
ENSAPLT00000010277
35603395 - 35608666
5272