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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35611295_35612912_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35611295 - 35612912
Intron Length:
1618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTACGTTCA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTTTTTTTCATA
Flanking Amino Acid:
DDTAAYLPTKLAAVACVGAF
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.4
0.36
1.2
62.1
39
Major BPS
80
0.75
1
78.6
31
Major PPT
90.2
0.9
0.6
87.8
22.4
Minor 5ss
42.3
-0.8
3
59.8
44.6
Minor BPS
64.7
0.46
1.7
78
33.3

Associated Gene:

Gene:
HEATR5B
Ensembl Gene ID:
ENSAPLG00000010102
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010603
35610418 - 35661920
51503