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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35614242_35614755_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35614242 - 35614755
Intron Length:
514

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTCCCTCCTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTCT
U12 Branch Point Sequence:
TTTTTTTTCTCT
Flanking Amino Acid:
SMAVRCAVAKCLLELQNEAV
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
73.7
32.5
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
79.8
0.67
0.7
76.8
25.3
Minor 5ss
25.2
-2.9
3.2
30.3
43.5
Minor BPS
45.5
-0.2
3.6
82.72
39.3

Associated Gene:

Gene:
HEATR5B
Ensembl Gene ID:
ENSAPLG00000010102
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010603
35610418 - 35661920
51503