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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_35616700_35618362_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35616700 - 35618362
Intron Length:
1663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGAAAC
5'SS Class:
major
3'SS Sequence:
TTATTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
ATACTTTTATTT
Flanking Amino Acid:
QAIGKQMKAVEAVVNDANSE
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
71.2
34.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
89.2
0.88
0.7
85.2
29.3
Minor 5ss
27.9
-2.5
2.8
26.6
36.4
Minor BPS
52.6
0.16
1.5
67.97
37.2

Associated Gene:

Gene:
HEATR5B
Ensembl Gene ID:
ENSAPLG00000010102
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010603
35610418 - 35661920
51503